Transcript: lnc-OR11H2-4:1

Basic information

LNCipedia transcript ID: lnc-OR11H2-4:1 
LNCipedia gene ID: lnc-OR11H2-4
Ensembl Gene ID: ENSG00000259069
Ensembl Transcript ID: ENST00000555580
Location (hg38): chr14:19677644-19679016
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 563 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555580.1; RP11-597A11.6-001; OTTHUMT00000409767.1; NONHSAT035540
Alternative gene names: ENSG00000259069.1; RP11-597A11.6; OTTHUMG00000170596.1; AL512310.10; AL512310.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.3939 non-coding 
CPAT coding probability 5.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR11H2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POTEM-4:1
4.0 lnc-POTEM-4:1
4.1 lnc-POTEM-4:1
5.0 lnc-POTEM-4:1
5.1 lnc-TEP1-19:1
5.2 lnc-OR11H2-4:1