Transcript: lnc-OR14J1-2:1

Basic information

LNCipedia transcript ID: lnc-OR14J1-2:1 
LNCipedia gene ID: lnc-OR14J1-2
RefSeq ID: NR_134629
Location (hg38): chr6:29223973-29267085
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 464 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000441381; ENST00000441381.1; XXbac-BPG308J9.3-001; OTTHUMT00000192829.1; NONHSAT108516; NR_134629.1
Alternative gene names: ENSG00000232505; XXbac-BPG308J9.3; ENSG00000232505.1; OTTHUMG00000085065.1; ENSG00000232505.2; LOC101929006


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.1853 non-coding 
CPAT coding probability 4.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR14J1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR14J1-1:1
3.1 lnc-OR14J1-2:1
4.0 lnc-OR14J1-2:1
4.1 lnc-OR14J1-2:1
5.0 lnc-OR14J1-2:1
5.1 lnc-OR2I1P-12:2
5.2 lnc-OR14J1-2:1