Transcript: lnc-OR1D5-1:2

Basic information

LNCipedia transcript ID: lnc-OR1D5-1:2 
LNCipedia gene ID: lnc-OR1D5-1
RefSeq ID: NR_110818
Location (hg38): chr17:2962247-2965895
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2547 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT144991; NR_110818; NR_110818.1
Alternative gene names: LOC101927911


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 222.3727 coding 
CPAT coding probability 58.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR1D5-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR1D2-1:2
4.0 lnc-OR1D2-1:2
4.1 lnc-OR1D2-1:2
5.0 lnc-OR1D2-1:2
5.1 lnc-RPH3AL-82:2
5.2 lnc-OR1D5-1:2