Transcript: lnc-OR1G1-1:1

Basic information

LNCipedia transcript ID: lnc-OR1G1-1:1 
LNCipedia gene ID: lnc-OR1G1-1
Ensembl Gene ID: ENSG00000261848
Ensembl Transcript ID: ENST00000575487
Location (hg38): chr17:3163005-3177031
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 515 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575487.1; CTD-2309O5.3-002; OTTHUMT00000439259.1; NONHSAT144996
Alternative gene names: ENSG00000261848.1; CTD-2309O5.3; OTTHUMG00000177853.1; ENSG00000261848.5; AC090282.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.8141 non-coding 
CPAT coding probability 7.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR1G1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR1G1-1:1
4.0 lnc-OR1G1-1:1
4.1 lnc-OR1G1-1:1
5.0 lnc-OR1G1-1:1
5.1 lnc-RPH3AL-84:1
5.2 lnc-OR1G1-1:1