Transcript: lnc-OR1G1-1:2

Basic information

LNCipedia transcript ID: lnc-OR1G1-1:2 
LNCipedia gene ID: lnc-OR1G1-1
Ensembl Gene ID: ENSG00000261848
Ensembl Transcript ID: ENST00000572821
Location (hg38): chr17:3134969-3176935
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572821.1; CTD-2309O5.3-001; OTTHUMT00000439258.1; ENST00000572821.5
Alternative gene names: ENSG00000261848.1; CTD-2309O5.3; OTTHUMG00000177853.1; ENSG00000261848.5; AC090282.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.8141 non-coding 
CPAT coding probability 22.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR1G1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR1G1-1:2
4.0 lnc-OR1G1-1:2
4.1 lnc-OR1G1-1:2
5.0 lnc-OR1G1-1:2
5.1 lnc-RPH3AL-84:2
5.2 lnc-OR1G1-1:2