Transcript: lnc-OR1J2-1:1

Basic information

LNCipedia transcript ID: lnc-OR1J2-1:1 
LNCipedia gene ID: lnc-OR1J2-1
Location (hg38): chr9:122471358-122475817
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 258 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000412262.1; RP11-542K23.9-001; OTTHUMT00000053942.1; NONHSAT134586
Alternative gene names: ENSG00000231465.1; RP11-542K23.9; OTTHUMG00000020612.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.9644 non-coding 
CPAT coding probability 4.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR1J2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR1J2-1:1
4.0 lnc-OR1J2-1:1
4.1 lnc-OR1J2-1:1
5.0 lnc-OR1J2-1:1
5.1 lnc-DAB2IP-17:1
5.2 lnc-OR1J2-1:1