Transcript: lnc-OR2A1-1:7

Basic information

LNCipedia transcript ID: lnc-OR2A1-1:7 
LNCipedia gene ID: lnc-OR2A1-1
Ensembl Gene ID: ENSG00000244198
Ensembl Transcript ID: ENST00000493248
Location (hg38): chr7:144195519-144250505
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 531 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000493248.1; RP4-545C24.1-005; OTTHUMT00000349991.1; NONHSAT123903; ENST00000493248.5
Alternative gene names: ENSG00000244198.1; RP4-545C24.1; OTTHUMG00000158007.1; ENSG00000244198.5; AC004889.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 69.8823 coding 
CPAT coding probability 3.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR2A1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTAGE4-1:5
4.0 lnc-OR2A1-1:7
4.1 lnc-OR2A1-1:7
5.0 lnc-OR2A1-1:7
5.1 lnc-ADCK2-56:7
5.2 lnc-OR2A1-1:7