Transcript: lnc-OR2C3-1:4

Basic information

LNCipedia transcript ID: lnc-OR2C3-1:4 
LNCipedia gene ID: lnc-OR2C3-1
Ensembl Gene ID: ENSG00000236817
Ensembl Transcript ID: ENST00000446347
Location (hg38): chr1:247565908-247640203
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 481 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446347.1; RP11-978I15.10-002; OTTHUMT00000097755.1; NONHSAT010785
Alternative gene names: ENSG00000236817.1; RP11-978I15.10; OTTHUMG00000040653.1; ENSG00000236817.5; AL606804.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.4219 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR2C3-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR13G1-1:2
4.0 lnc-OR13G1-1:2
4.1 lnc-OR13G1-1:2
5.0 lnc-OR13G1-1:2
5.1 lnc-LYPD8-14:2
5.2 lnc-OR2C3-1:4