Transcript: lnc-OR2H1-7:1

Basic information

LNCipedia transcript ID: lnc-OR2H1-7:1 
LNCipedia gene ID: lnc-OR2H1-7
Ensembl Gene ID: ENSG00000229274
Ensembl Transcript ID: ENST00000436804
Location (hg38): chr6:29497509-29510556
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 877 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436804; ENST00000436804.1; XXbac-BPG13B8.10-001; OTTHUMT00000194570.1; NONHSAT108524
Alternative gene names: ENSG00000229274; XXbac-BPG13B8.10; ENSG00000229274.1; OTTHUMG00000086581.1; AL662860.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.3566 non-coding 
CPAT coding probability 10.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR2H1-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR2H1-1:1
3.1 lnc-OR2H1-7:1
4.0 lnc-OR2H1-7:1
4.1 lnc-OR2H1-7:1
5.0 lnc-OR2H1-7:1
5.1 lnc-OR2I1P-7:1
5.2 lnc-OR2H1-7:1