Transcript: lnc-OR2J1-2:1

Basic information

LNCipedia transcript ID: lnc-OR2J1-2:1 
LNCipedia gene ID: lnc-OR2J1-2
RefSeq ID: NR_125387
Location (hg38): chr6:29036021-29076740
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 727 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125387; NR_125387.1
Alternative gene names: LOC100129636


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -9.707 non-coding 
CPAT coding probability 77.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR2J1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR2J1-2:1
4.0 lnc-OR2J1-2:1
4.1 lnc-OR2J1-2:1
5.0 lnc-OR2J1-2:1
5.1 lnc-OR2I1P-28:1
5.2 lnc-OR2J1-2:1