Transcript: lnc-OR2Z1-1:5

Basic information

LNCipedia transcript ID: lnc-OR2Z1-1:5 
LNCipedia gene ID: lnc-OR2Z1-1
Ensembl Gene ID: ENSG00000269400
Ensembl Transcript ID: ENST00000595277
Location (hg38): chr19:8833065-8833541
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 477 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT060940; ENST00000595277.1
Alternative gene names: ENSG00000269400.1; CTD-2529P6.4; AC008734.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.3106 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR2Z1-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MBD3L1-1:1
4.0 lnc-MBD3L1-1:1
4.1 lnc-MBD3L1-1:1
5.0 lnc-MBD3L1-1:1
5.1 lnc-CCL25-39:1
5.2 lnc-OR2Z1-1:5