Transcript: lnc-OR3A2-1:9

Basic information

LNCipedia transcript ID: lnc-OR3A2-1:9 
LNCipedia gene ID: lnc-OR3A2-1
Location (hg38): chr17:3279104-3386293
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 313 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000576166.1; RP11-64J4.2-003; OTTHUMT00000438372.1; NONHSAT144999
Alternative gene names: ENSG00000262670.1; RP11-64J4.2; OTTHUMG00000177668.1; ENSG00000262670.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 62.6794 coding 
CPAT coding probability 29.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR3A2-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR3A1-1:3
4.0 lnc-OR3A1-1:3
4.1 lnc-OR3A2-1:9
5.0 lnc-OR3A2-1:9
5.1 lnc-RPH3AL-85:9
5.2 lnc-OR3A2-1:9