Transcript: lnc-OR4F16-4:2

Basic information

LNCipedia transcript ID: lnc-OR4F16-4:2 
LNCipedia gene ID: lnc-OR4F16-4
Location (hg38): chr1:759032-764925
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 295 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000417659; ENST00000417659.1; RP11-206L10.5-001; OTTHUMT00000006892.1; NONHSAT000115
Alternative gene names: ENSG00000240618; RP11-206L10.5; ENSG00000240618.1; OTTHUMG00000002409.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.9124 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F16-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4F16-3:2
3.1 lnc-OR4F16-4:2
4.0 lnc-OR4F16-4:2
4.1 lnc-OR4F16-4:2
5.0 lnc-OR4F16-4:2
5.1 lnc-CLSTN1-171:4
5.2 lnc-OR4F16-4:2