Transcript: lnc-OR4F29-1:19

Basic information

LNCipedia transcript ID: lnc-OR4F29-1:19 
LNCipedia gene ID: lnc-OR4F29-1
RefSeq ID: NR_028322
Location (hg38): chr1:490756-495445
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4370 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT000056; NR_028322; NR_028325; NR_028322.1
Alternative gene names: LOC100132287


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 162.3495 coding 
CPAT coding probability 99.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR4F29-1:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F29-1:19
4.0 lnc-OR4F29-1:19
4.1 lnc-OR4F29-1:19
5.0 lnc-OR4F29-1:19
5.1 lnc-CLSTN1-177:19
5.2 lnc-OR4F29-1:19