Transcript: lnc-OR4F29-1:2

Basic information

LNCipedia transcript ID: lnc-OR4F29-1:2 
LNCipedia gene ID: lnc-OR4F29-1
Location (hg38): chr1:494876-499175
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000423728.1; RP4-669L17.10-002; OTTHUMT00000346879.1; NONHSAT000047; ENST00000423728.5
Alternative gene names: ENSG00000237094.3; RP4-669L17.10; OTTHUMG00000156968.1; ENSG00000237094.7; ENSG00000237094.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.3434 non-coding 
CPAT coding probability 5.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F29-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F29-1:2
4.0 lnc-OR4F29-1:2
4.1 lnc-OR4F29-1:2
5.0 lnc-OR4F29-1:2
5.1 lnc-CLSTN1-177:5
5.2 lnc-OR4F29-1:2