Transcript: lnc-OR4F29-1:23

Basic information

LNCipedia transcript ID: lnc-OR4F29-1:23 
LNCipedia gene ID: lnc-OR4F29-1
Location (hg38): chr1:373182-485208
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 413 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT000065; ENST00000455207.1; ENST00000455207.5
Alternative gene names: ENSG00000237094.7; RP4-669L17.10; ENSG00000237094.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 34.4721 non-coding 
CPAT coding probability 34.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F29-1:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F29-1:23
4.0 lnc-OR4F29-1:23
4.1 lnc-OR4F29-1:23
5.0 lnc-OR4F29-1:23
5.1 lnc-CLSTN1-177:27
5.2 lnc-OR4F29-1:23