Transcript: lnc-OR4F29-1:3

Basic information

LNCipedia transcript ID: lnc-OR4F29-1:3 
LNCipedia gene ID: lnc-OR4F29-1
Location (hg38): chr1:498281-499175
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: TCONS_00000120; ENST00000432964.1; RP4-669L17.10-001; OTTHUMT00000346878.1; NONHSAT000048
Alternative gene names: XLOC_000002; linc-OR4F16-9; ENSG00000237094.3; RP4-669L17.10; OTTHUMG00000156968.1; ENSG00000237094.7; ENSG00000237094.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.235 non-coding 
CPAT coding probability 5.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F29-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4F29-1:1
3.1 lnc-OR4F29-1:3
4.0 lnc-OR4F29-1:3
4.1 lnc-OR4F29-1:3
5.0 lnc-OR4F29-1:3
5.1 lnc-CLSTN1-177:4
5.2 lnc-OR4F29-1:3