Transcript: lnc-OR4F29-1:6

Basic information

LNCipedia transcript ID: lnc-OR4F29-1:6 
LNCipedia gene ID: lnc-OR4F29-1
Location (hg38): chr1:493441-494899
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1170 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000534867.1; RP4-669L17.10-202; NONHSAT000058
Alternative gene names: ENSG00000237094.3; RP4-669L17.10; OTTHUMG00000156968.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 86.866 coding 
CPAT coding probability 71.13% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR4F29-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F29-1:6
4.0 lnc-OR4F29-1:6
4.1 lnc-OR4F29-1:6
5.0 lnc-OR4F29-1:6
5.1 lnc-CLSTN1-177:21
5.2 lnc-OR4F29-1:6