Transcript: lnc-OR4F29-1:8

Basic information

LNCipedia transcript ID: lnc-OR4F29-1:8 
LNCipedia gene ID: lnc-OR4F29-1
Location (hg38): chr1:490884-494581
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2661 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000425496.2; RP4-669L17.10-203; NONHSAT000060
Alternative gene names: ENSG00000237094.3; RP4-669L17.10; OTTHUMG00000156968.1; ENSG00000237094.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 230.6008 coding 
CPAT coding probability 96.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OR4F29-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F29-1:8
4.0 lnc-OR4F29-1:8
4.1 lnc-OR4F29-1:8
5.0 lnc-OR4F29-1:8
5.1 lnc-CLSTN1-177:23
5.2 lnc-OR4F29-1:8