Transcript: lnc-OR4F29-1:9

Basic information

LNCipedia transcript ID: lnc-OR4F29-1:9 
LNCipedia gene ID: lnc-OR4F29-1
Location (hg38): chr1:494464-501617
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 746 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT000045; ENST00000440038.2; ENST00000440038.6
Alternative gene names: ENSG00000237094.7; RP4-669L17.10; ENSG00000237094.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.5915 non-coding 
CPAT coding probability 27.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F29-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4F29-1:9
4.0 lnc-OR4F29-1:9
4.1 lnc-OR4F29-1:9
5.0 lnc-OR4F29-1:9
5.1 lnc-CLSTN1-177:1
5.2 lnc-OR4F29-1:9