Transcript: lnc-OR4F29-2:1

Basic information

LNCipedia transcript ID: lnc-OR4F29-2:1 
LNCipedia gene ID: lnc-OR4F29-2
Location (hg38): chr1:357383-359681
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 676 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: TCONS_00000121; ENST00000441866; ENST00000441866.1; RP5-857K21.15-001; OTTHUMT00000346905.1; NONHSAT000076
Alternative gene names: XLOC_000003; linc-SAMD11-9; ENSG00000236743; RP5-857K21.15; ENSG00000236743.1; OTTHUMG00000156971.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.6238 non-coding 
CPAT coding probability 6.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F29-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4F29-2:1
3.1 lnc-OR4F29-2:1
4.0 lnc-OR4F29-2:1
4.1 lnc-OR4F29-2:1
5.0 lnc-OR4F29-2:1
5.1 lnc-CLSTN1-178:1
5.2 lnc-OR4F29-2:1