Transcript: lnc-OR4F29-3:8

Basic information

LNCipedia transcript ID: lnc-OR4F29-3:8 
LNCipedia gene ID: lnc-OR4F29-3
Ensembl Gene ID: ENSG00000241860
Ensembl Transcript ID: ENST00000491962
Location (hg38): chr1:165889-168767
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 278 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000491962; ENST00000491962.1; RP11-34P13.13-002; OTTHUMT00000007168.1; NONHSAT000039
Alternative gene names: ENSG00000239368; RP11-34P13.13; ENSG00000239368.1; OTTHUMG00000002480.2; ENSG00000241860.2; ENSG00000241860.6; AL627309.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.166 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F29-3:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM138A-4:2
3.1 lnc-FAM138A-4:2
4.0 lnc-FAM138A-3:7
4.1 lnc-FAM138A-3:7
5.0 lnc-FAM138A-3:7
5.1 lnc-CLSTN1-180:3
5.2 lnc-OR4F29-3:8