Transcript: lnc-OR4F3-4:1

Basic information

LNCipedia transcript ID: lnc-OR4F3-4:1 
LNCipedia gene ID: lnc-OR4F3-4
Ensembl Gene ID: ENSG00000250765
Ensembl Transcript ID: ENST00000509192
Location (hg38): chr5:181329241-181342213
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 727 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT105956; ENST00000509192.1; ENST00000509192.5
Alternative gene names: ENSG00000250765.1; AC138035.1; ENSG00000250765.5; ENSG00000250765.6; AC138035.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.0545 non-coding 
CPAT coding probability 25.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC138035.1.1-1:1
4.0 lnc-AC138035.1.1-1:1
4.1 lnc-AC138035.1.1-1:1
5.0 lnc-AC138035.1.1-1:1
5.1 lnc-SQSTM1-33:1
5.2 lnc-OR4F3-4:1