Transcript: lnc-OR4F3-5:7

Basic information

LNCipedia transcript ID: lnc-OR4F3-5:7 
LNCipedia gene ID: lnc-OR4F3-5
Ensembl Gene ID: ENSG00000238035
Ensembl Transcript ID: ENST00000604669
Location (hg38): chr5:181316325-181321816
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 683 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT105951; ENST00000604669.1; ENST00000604669.5
Alternative gene names: ENSG00000238035.4; AC138035.2; ENSG00000238035.8; AC138035.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.8207 non-coding 
CPAT coding probability 13.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4F3-5:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC138035.1-2:2
4.0 lnc-AC138035.1-2:2
4.1 lnc-AC138035.1-2:2
5.0 lnc-AC138035.1-2:2
5.1 lnc-SQSTM1-32:7
5.2 lnc-OR4F3-5:7