Transcript: lnc-OR51B6-1:1

Basic information

LNCipedia transcript ID: lnc-OR51B6-1:1 
LNCipedia gene ID: lnc-OR51B6-1
Ensembl Gene ID: ENSG00000224091
Ensembl Transcript ID: ENST00000418080
Location (hg38): chr11:5205041-5207308
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 522 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019139; ENST00000418080.1; AC104389.16-001; OTTHUMT00000142980.1; NONHSAT017663
Alternative gene names: XLOC_009040; linc-OR51B6; ENSG00000224091.1; AC104389.16; OTTHUMG00000066679.1; AC104389.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.2911 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR51B6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR51B6-1:1
3.1 lnc-OR51B6-1:1
4.0 lnc-OR51B6-1:1
4.1 lnc-OR51B6-1:1
5.0 lnc-OR51B6-1:1
5.1 lnc-OR51M1-1:1
5.2 lnc-OR51B6-1:1