Transcript: lnc-OR52A5-1:1

Basic information

LNCipedia transcript ID: lnc-OR52A5-1:1 
LNCipedia gene ID: lnc-OR52A5-1
Ensembl Gene ID: ENSG00000236897
Ensembl Transcript ID: ENST00000428160
Location (hg38): chr11:5106062-5107530
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 869 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019166; ENST00000428160; ENST00000428160.1; AC113331.9-001; OTTHUMT00000142819.1; NONHSAT017661
Alternative gene names: XLOC_009364; linc-OR52E2; ENSG00000236897; AC113331.9; ENSG00000236897.1; OTTHUMG00000066612.1; AC113331.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.1423 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR52A5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR52A5-1:1
3.1 lnc-OR52A5-1:1
4.0 lnc-OR52A5-1:1
4.1 lnc-OR52A5-1:1
5.0 lnc-OR52A5-1:1
5.1 lnc-OR52A1-1:1
5.2 lnc-OR52A5-1:1