Transcript: lnc-OR5AK2-1:1

Basic information

LNCipedia transcript ID: lnc-OR5AK2-1:1 
LNCipedia gene ID: lnc-OR5AK2-1
Ensembl Gene ID: ENSG00000255433
Ensembl Transcript ID: ENST00000532274
Location (hg38): chr11:56848478-56877211
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2034 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532274; ENST00000532274.1; AP000479.1-003; OTTHUMT00000391949.2; NONHSAT021399; ENST00000532274.5
Alternative gene names: ENSG00000255433; AP000479.1; ENSG00000255433.1; OTTHUMG00000166934.3; ENSG00000255433.5; AP001803.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.189 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR5AK2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR5AK2-1:2
3.1 lnc-OR5AK2-1:1
4.0 lnc-OR5AK2-1:1
4.1 lnc-OR5AK2-1:1
5.0 lnc-OR5AK2-1:1
5.1 lnc-OR5T3-9:5
5.2 lnc-OR5AK2-1:1