Transcript: lnc-OR8D4-1:1

Basic information

LNCipedia transcript ID: lnc-OR8D4-1:1 
LNCipedia gene ID: lnc-OR8D4-1
Location (hg38): chr11:123454398-123460410
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2471 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000525757; ENST00000525757.1; AP000783.2-001; OTTHUMT00000387402.1; NONHSAT024857
Alternative gene names: ENSG00000255414; AP000783.2; ENSG00000255414.1; OTTHUMG00000166003.1; LINC01059;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.4977 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR8D4-1:1 yes no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP000783.1.1-1:1
3.1 lnc-AP000783.1.1-1:1
4.0 LINC01059:1
4.1 LINC01059:1
5.0 LINC01059:1
5.1 lnc-HINFP-53:1
5.2 lnc-OR8D4-1:1