Transcript: lnc-ORAOV1-1:5

Basic information

LNCipedia transcript ID: lnc-ORAOV1-1:5 
LNCipedia gene ID: lnc-ORAOV1-1
Ensembl Gene ID: ENSG00000255774
Ensembl Transcript ID: ENST00000645449
Location (hg38): chr11:69475567-69481545
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2167 bp
Exons: 2
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000645449.1
Alternative gene names: ENSG00000255774.2; AP000439.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -56.2503 non-coding 
CPAT coding probability 28.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ORAOV1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-KMT5B-23:1
5.1 lnc-KMT5B-23:1
5.2 lnc-ORAOV1-1:5