Transcript: lnc-ORAOV1-3:1

Basic information

LNCipedia transcript ID: lnc-ORAOV1-3:1 
LNCipedia gene ID: lnc-ORAOV1-3
Ensembl Gene ID: ENSG00000255606
Ensembl Transcript ID: ENST00000544004
Location (hg38): chr11:69438365-69444743
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 581 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544004; ENST00000544004.1; AP000439.2-001; OTTHUMT00000397434.1; NONHSAT022604
Alternative gene names: ENSG00000255606; AP000439.2; ENSG00000255606.1; OTTHUMG00000168001.1; AP000439.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.2061 non-coding 
CPAT coding probability 2.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ORAOV1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ORAOV1-3:1
3.1 lnc-ORAOV1-3:1
4.0 lnc-ORAOV1-3:1
4.1 lnc-ORAOV1-3:1
5.0 lnc-ORAOV1-3:1
5.1 lnc-KMT5B-22:6
5.2 lnc-ORAOV1-3:1