Transcript: lnc-OTOP1-6:3

Basic information

LNCipedia transcript ID: lnc-OTOP1-6:3 
LNCipedia gene ID: lnc-OTOP1-6
Location (hg38): chr4:3941942-3955421
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3413 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT094906; NR_024253
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 290.4038 coding 
CPAT coding probability 72.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OTOP1-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OTOP1-6:3
4.0 lnc-OTOP1-6:3
4.1 lnc-OTOP1-6:3
5.0 lnc-OTOP1-6:3
5.1 lnc-PSAPL1-37:2
5.2 lnc-OTOP1-6:3