Transcript: lnc-OTOS-1:1

Basic information

LNCipedia transcript ID: lnc-OTOS-1:1 
LNCipedia gene ID: lnc-OTOS-1
Ensembl Gene ID: ENSG00000227479
Ensembl Transcript ID: ENST00000457178
Location (hg38): chr2:240227560-240256035
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003521; ENST00000457178; ENST00000457178.1; AC124861.1-001; OTTHUMT00000326022.1; NONHSAT077813
Alternative gene names: XLOC_002542; linc-OTOS-2; ENSG00000227479; AC124861.1; ENSG00000227479.1; OTTHUMG00000152377.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.2741 non-coding 
CPAT coding probability 6.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OTOS-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OTOS-1:1
3.1 lnc-OTOS-1:1
4.0 lnc-OTOS-1:1
4.1 lnc-OTOS-1:1
5.0 lnc-OTOS-1:1
5.1 lnc-STK25-35:1
5.2 lnc-OTOS-1:1