Transcript: lnc-OTX2-1:4

Basic information

LNCipedia transcript ID: lnc-OTX2-1:4 
LNCipedia gene ID: lnc-OTX2-1
Ensembl Gene ID: ENSG00000258776
Ensembl Transcript ID: ENST00000555946
Location (hg38): chr14:56880818-56893159
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 690 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555946; ENST00000555946.1; RP11-1085N6.5-004; OTTHUMT00000412899.1; NONHSAT037072
Alternative gene names: ENSG00000258776; RP11-1085N6.5; ENSG00000258776.1; OTTHUMG00000171305.1; AL161757.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.5841 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OTX2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OTX2-1:4
3.1 lnc-OTX2-1:4
4.0 lnc-OTX2-1:4
4.1 lnc-OTX2-1:4
5.0 lnc-OTX2-1:4
5.1 lnc-RTN1-32:4
5.2 lnc-OTX2-1:4