Transcript: lnc-OTX2-2:1

Basic information

LNCipedia transcript ID: lnc-OTX2-2:1 
LNCipedia gene ID: lnc-OTX2-2
Location (hg38): chr14:56514250-56515478
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 489 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023112; NONHSAT037051
Alternative gene names: XLOC_011038; linc-TBPL2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.3144 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OTX2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-1085N6.3.1-1:1
3.1 lnc-RP11-1085N6.3.1-2:1
4.0 lnc-RP11-1085N6.3.1-2:1
4.1 lnc-RP11-1085N6.3.1-2:1
5.0 lnc-RP11-1085N6.3.1-2:1
5.1 lnc-RTN1-37:1
5.2 lnc-OTX2-2:1