Transcript: lnc-OTX2-9:1

Basic information

LNCipedia transcript ID: lnc-OTX2-9:1 
LNCipedia gene ID: lnc-OTX2-9
Ensembl Gene ID: ENSG00000258428
Ensembl Transcript ID: ENST00000555924
Location (hg38): chr14:56633249-56648658
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 397 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555924.1; RP11-1085N6.2-002; OTTHUMT00000411518.1; NONHSAT037057
Alternative gene names: ENSG00000258428.1; RP11-1085N6.2; OTTHUMG00000171067.1; ENSG00000258428.5; AL161757.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.3978 non-coding 
CPAT coding probability 1.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OTX2-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-1085N6.3.1-1:1
4.0 lnc-RP11-1085N6.3.1-1:1
4.1 lnc-RP11-1085N6.3.1-1:1
5.0 lnc-RP11-1085N6.3.1-1:1
5.1 lnc-RTN1-36:1
5.2 lnc-OTX2-9:1