Transcript: lnc-OVOL1-1:1

Basic information

LNCipedia transcript ID: lnc-OVOL1-1:1 
LNCipedia gene ID: lnc-OVOL1-1
Ensembl Gene ID: ENSG00000255557
Ensembl Transcript ID: ENST00000534505
Location (hg38): chr11:65745729-65771585
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 464 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534505; ENST00000534505.1; RP11-770G2.2-001; OTTHUMT00000390635.1; NONHSAT022209
Alternative gene names: ENSG00000255557; RP11-770G2.2; ENSG00000255557.1; OTTHUMG00000166592.1; AP001266.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.1287 non-coding 
CPAT coding probability 2.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OVOL1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OVOL1-1:1
3.1 lnc-OVOL1-1:1
4.0 lnc-OVOL1-1:1
4.1 lnc-OVOL1-1:1
5.0 lnc-OVOL1-1:1
5.1 lnc-PPP2R5B-67:1
5.2 lnc-OVOL1-1:1