Transcript: lnc-OXCT1-1:2

Basic information

LNCipedia transcript ID: lnc-OXCT1-1:2 
LNCipedia gene ID: lnc-OXCT1-1
Location (hg38): chr5:42159025-42175342
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010925; NONHSAT101201
Alternative gene names: XLOC_004800; linc-OXCT1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.0747 non-coding 
CPAT coding probability 15.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OXCT1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OXCT1-1:4
3.1 lnc-OXCT1-1:2
4.0 lnc-OXCT1-1:2
4.1 lnc-OXCT1-1:2
5.0 lnc-OXCT1-1:2
5.1 lnc-SELENOP-22:6
5.2 lnc-OXCT1-1:2