Transcript: lnc-OXCT1-1:8

Basic information

LNCipedia transcript ID: lnc-OXCT1-1:8 
LNCipedia gene ID: lnc-OXCT1-1
Location (hg38): chr5:42155833-42175254
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1916 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000513015; TCONS_00009276; NONHSAT101197
Alternative gene names: ENSG00000248519; XLOC_004800; linc-OXCT1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.1638 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OXCT1-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OXCT1-1:8
3.1 lnc-OXCT1-1:8
4.0 lnc-OXCT1-1:8
4.1 lnc-OXCT1-1:8
5.0 lnc-OXCT1-1:8
5.1 lnc-SELENOP-22:10
5.2 lnc-OXCT1-1:8