Transcript: lnc-OXCT1-1:9

Basic information

LNCipedia transcript ID: lnc-OXCT1-1:9 
LNCipedia gene ID: lnc-OXCT1-1
Location (hg38): chr5:42156932-42175173
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 611 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010317; NONHSAT101199
Alternative gene names: XLOC_004800; linc-OXCT1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.2063 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OXCT1-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OXCT1-1:9
3.1 lnc-OXCT1-1:9
4.0 lnc-OXCT1-1:9
4.1 lnc-OXCT1-1:9
5.0 lnc-OXCT1-1:9
5.1 lnc-SELENOP-22:11
5.2 lnc-OXCT1-1:9