Transcript: lnc-OXSM-3:1

Basic information

LNCipedia transcript ID: lnc-OXSM-3:1 
LNCipedia gene ID: lnc-OXSM-3
Location (hg38): chr3:25749488-25749896
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 409 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT088718
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
PLVKPKIIKK 100% sense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.5895 non-coding 
CPAT coding probability 83.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-OXSM-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OXSM-3:1
4.0 lnc-OXSM-3:1
4.1 lnc-OXSM-3:1
5.0 lnc-OXSM-3:1
5.1 lnc-CMC1-21:1
5.2 lnc-OXSM-3:1