Transcript: lnc-P4HA1-1:1

Basic information

LNCipedia transcript ID: lnc-P4HA1-1:1 
LNCipedia gene ID: lnc-P4HA1-1
Ensembl Gene ID: ENSG00000272630
Ensembl Transcript ID: ENST00000608005
Location (hg38): chr10:73098044-73101297
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3005 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507930; TCONS_00017996; NONHSAT013940; ENST00000608005.1
Alternative gene names: ENSG00000251086; XLOC_008852; linc-P4HA1; ENSG00000272630.1; RP11-344N10.5; AL731563.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.0792 non-coding 
CPAT coding probability 4.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-P4HA1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-P4HA1-1:1
3.1 lnc-P4HA1-1:1
4.0 lnc-P4HA1-1:1
4.1 lnc-P4HA1-1:1
5.0 lnc-P4HA1-1:1
5.1 lnc-VSIR-18:1
5.2 lnc-P4HA1-1:1