Transcript: lnc-PABPC4-1:27

Basic information

LNCipedia transcript ID: lnc-PABPC4-1:27 
LNCipedia gene ID: lnc-PABPC4-1
Location (hg38): chr1:39522280-39524876
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 493 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000441741.1; RP11-69E11.4-002; OTTHUMT00000023077.1; ENST00000441741.5
Alternative gene names: ENSG00000182109.3; RP11-69E11.4; OTTHUMG00000008392.3; ENSG00000182109.7; AL365277.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -165.9475 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPC4-1:27 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PABPC4-2:7
4.0 lnc-PABPC4-1:27
4.1 lnc-PABPC4-1:27
5.0 lnc-PABPC4-1:27
5.1 lnc-PABPC4-1:27
5.2 lnc-PABPC4-1:27