Transcript: lnc-PABPC4-3:1

Basic information

LNCipedia transcript ID: lnc-PABPC4-3:1 
LNCipedia gene ID: lnc-PABPC4-3
Ensembl Gene ID: ENSG00000226438
Ensembl Transcript ID: ENST00000289890
Location (hg38): chr1:39249838-39257649
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 558 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000289890.7; RP11-420K8.1-001; OTTHUMT00000023009.1; NONHSAT002547
Alternative gene names: ENSG00000226438.1; RP11-420K8.1; OTTHUMG00000008348.1; AL442071.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 147.5177 coding 
CPAT coding probability 7.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PABPC4-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PABPC4-3:1
4.0 lnc-PABPC4-3:1
4.1 lnc-PABPC4-3:1
5.0 lnc-PABPC4-3:1
5.1 lnc-PABPC4-3:1
5.2 lnc-PABPC4-3:1