Transcript: lnc-PABPC4L-21:8

Basic information

LNCipedia transcript ID: lnc-PABPC4L-21:8 
LNCipedia gene ID: lnc-PABPC4L-21
Ensembl Gene ID: ENSG00000251555
Ensembl Transcript ID: ENST00000510592
Location (hg38): chr4:131930031-131975952
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510592; ENST00000510592.1; RP11-745L13.2-001; OTTHUMT00000364254.1; NONHSAT098329; FPKM1_group_24119_transcript_1
Alternative gene names: ENSG00000251555; RP11-745L13.2; ENSG00000251555.1; OTTHUMG00000161235.1; AC096711.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.065 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPC4L-21:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-62N21.1.1-2:1
3.1 lnc-RP11-62N21.1.1-2:1
4.0 lnc-RP11-62N21.1.1-2:1
4.1 lnc-RP11-62N21.1.1-2:1
5.0 lnc-RP11-62N21.1.1-2:1
5.1 lnc-CLGN-68:8
5.2 lnc-PABPC4L-21:8