Transcript: lnc-PABPC4L-2:1

Basic information

LNCipedia transcript ID: lnc-PABPC4L-2:1 
LNCipedia gene ID: lnc-PABPC4L-2
Ensembl Gene ID: ENSG00000251598
Ensembl Transcript ID: ENST00000420721
Location (hg38): chr4:132004810-132124031
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007831; ENST00000420721; ENST00000420721.2; RP11-789C2.1-001; OTTHUMT00000366029.1; NONHSAT098330
Alternative gene names: XLOC_004078; linc-SCLT1-6; ENSG00000251598; RP11-789C2.1; ENSG00000251598.1; OTTHUMG00000161767.1; AC096711.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.9016 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPC4L-2:1 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-62N21.1.1-1:1
3.1 lnc-RP11-62N21.1.1-1:1
4.0 lnc-RP11-62N21.1.1-1:1
4.1 lnc-RP11-62N21.1.1-1:1
5.0 lnc-RP11-62N21.1.1-1:1
5.1 lnc-CLGN-66:1
5.2 lnc-PABPC4L-2:1