Transcript: lnc-PABPC4L-5:13

Basic information

LNCipedia transcript ID: lnc-PABPC4L-5:13 
LNCipedia gene ID: lnc-PABPC4L-5
Ensembl Gene ID: ENSG00000250241
Ensembl Transcript ID: ENST00000506897
Location (hg38): chr4:133075311-133096826
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506897; ENST00000506897.1; RP11-9G1.3-002; OTTHUMT00000364455.1; NONHSAT098342
Alternative gene names: ENSG00000250241; RP11-9G1.3; ENSG00000250241.1; OTTHUMG00000161299.2; ENSG00000250241.5; AC105383.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.665 non-coding 
CPAT coding probability 6.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPC4L-5:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-62N21.1.1-5:3
3.1 lnc-RP11-62N21.1.1-5:3
4.0 lnc-RP11-62N21.1.1-5:3
4.1 lnc-RP11-62N21.1.1-5:3
5.0 lnc-RP11-62N21.1.1-5:3
5.1 lnc-CLGN-61:13
5.2 lnc-PABPC4L-5:13