Transcript: lnc-PABPC4L-5:4

Basic information

LNCipedia transcript ID: lnc-PABPC4L-5:4 
LNCipedia gene ID: lnc-PABPC4L-5
Ensembl Gene ID: ENSG00000250241
Ensembl Transcript ID: ENST00000505289
Location (hg38): chr4:133093860-133149113
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2820 bp
Exons: 9
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505289; ENST00000505289.1; RP11-9G1.3-001; OTTHUMT00000364454.1; NONHSAT098343; ENST00000505289.5
Alternative gene names: ENSG00000250241; RP11-9G1.3; ENSG00000250241.1; OTTHUMG00000161299.2; ENSG00000250241.5; AC105383.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.8331 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPC4L-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-62N21.1.1-5:2
3.1 lnc-RP11-62N21.1.1-5:2
4.0 lnc-RP11-62N21.1.1-5:2
4.1 lnc-RP11-62N21.1.1-5:2
5.0 lnc-RP11-62N21.1.1-5:2
5.1 lnc-CLGN-61:4
5.2 lnc-PABPC4L-5:4