Transcript: lnc-PABPC4L-7:1

Basic information

LNCipedia transcript ID: lnc-PABPC4L-7:1 
LNCipedia gene ID: lnc-PABPC4L-7
Ensembl Gene ID: ENSG00000250865
Ensembl Transcript ID: ENST00000511234
Location (hg38): chr4:135792384-135805904
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007840; ENST00000511234; ENST00000511234.1; RP11-780O17.1-001; OTTHUMT00000364199.1; NONHSAT098373
Alternative gene names: XLOC_004086; linc-PABPC4L-2; ENSG00000250865; RP11-780O17.1; ENSG00000250865.1; OTTHUMG00000161218.1; AC105362.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.0976 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPC4L-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH18-5:1
3.1 lnc-PCDH18-7:1
4.0 lnc-PCDH18-7:1
4.1 lnc-PCDH18-7:1
5.0 lnc-PCDH18-7:1
5.1 lnc-CLGN-48:1
5.2 lnc-PABPC4L-7:1