Transcript: lnc-PABPN1L-1:2

Basic information

LNCipedia transcript ID: lnc-PABPN1L-1:2 
LNCipedia gene ID: lnc-PABPN1L-1
Ensembl Gene ID: ENSG00000261226
Ensembl Transcript ID: ENST00000561980
Location (hg38): chr16:88936779-88937756
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 531 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561980.1; RP11-830F9.7-002; OTTHUMT00000431802.1; NONHSAT144454
Alternative gene names: ENSG00000261226.1; RP11-830F9.7; OTTHUMG00000176349.1; AC092384.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -267.5405 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPN1L-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PABPN1L-1:2
4.0 lnc-PABPN1L-1:2
4.1 lnc-PABPN1L-1:2
5.0 lnc-PABPN1L-1:2
5.1 lnc-KLHDC4-41:2
5.2 lnc-PABPN1L-1:2