Transcript: lnc-PADI1-1:1

Basic information

LNCipedia transcript ID: lnc-PADI1-1:1 
LNCipedia gene ID: lnc-PADI1-1
Ensembl Gene ID: ENSG00000204362
Ensembl Transcript ID: ENST00000412427
Location (hg38): chr1:17189783-17197617
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4676 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000159; ENST00000412427; ENST00000412427.1; RP11-380J14.1-001; OTTHUMT00000006615.1; NONHSAT001236
Alternative gene names: XLOC_000068; linc-PADI1-1; ENSG00000204362; RP11-380J14.1; ENSG00000204362.4; OTTHUMG00000002291.1; ENSG00000204362.5; ENSG00000204362.6; AL590644.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.2057 non-coding 
CPAT coding probability 33.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PADI1-1:1 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PADI1-1:1
3.1 lnc-PADI1-1:1
4.0 lnc-PADI1-1:1
4.1 lnc-PADI1-1:1
5.0 lnc-PADI1-1:1
5.1 lnc-SZRD1-47:1
5.2 lnc-PADI1-1:1